org.mulinlab.varnote.operations.readers.itf

Class LongLineReader

java.lang.Object

org.mulinlab.varnote.operations.readers.itf.LongLineReader

All Implemented Interfaces:

QueryReaderItf

public final class LongLineReader
extends java.lang.Object
implements QueryReaderItf

Constructor Summary

Constructors

Constructor and Description
LongLineReader(htsjdk.tribble.readers.LongLineBufferedReader reader)
LongLineReader(java.lang.String path)

Method Summary

Modifier and Type	Method and Description
void	closeReader()
java.lang.String	getFilePath()
long	getPosition()
void	initReader()
java.lang.String	readLine()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LongLineReader

public LongLineReader(java.lang.String path)
               throws java.io.FileNotFoundException

Throws:

java.io.FileNotFoundException

LongLineReader

public LongLineReader(htsjdk.tribble.readers.LongLineBufferedReader reader)

Method Detail

initReader

public void initReader()
                throws java.io.IOException

Specified by:

initReader in interface QueryReaderItf

Throws:

java.io.IOException

getFilePath

public java.lang.String getFilePath()

Specified by:

getFilePath in interface QueryReaderItf

readLine

public java.lang.String readLine()
                          throws java.lang.Exception

Specified by:

readLine in interface QueryReaderItf

Throws:

java.lang.Exception

getPosition

public long getPosition()

Specified by:

getPosition in interface QueryReaderItf

closeReader

public void closeReader()
                 throws java.io.IOException

Specified by:

closeReader in interface QueryReaderItf

Throws:

java.io.IOException