org.mulinlab.varnote.utils.jannovar

Class TranscriptAnnotation.Builder

java.lang.Object

org.mulinlab.varnote.utils.jannovar.TranscriptAnnotation.Builder

Enclosing class:

TranscriptAnnotation

public static class TranscriptAnnotation.Builder
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
Builder()

Method Summary

Modifier and Type	Method and Description
TranscriptAnnotation.Builder	accession(java.lang.String accession)
TranscriptAnnotation	build()
TranscriptAnnotation.Builder	distanceFromNearestGene(int distanceFromNearestGene)
TranscriptAnnotation.Builder	geneSymbol(java.lang.String geneSymbol)
TranscriptAnnotation.Builder	hgvsCdna(java.lang.String hgvsCdna)
TranscriptAnnotation.Builder	hgvsGenomic(java.lang.String hgvsGenomic)
TranscriptAnnotation.Builder	hgvsProtein(java.lang.String hgvsProtein)
TranscriptAnnotation.Builder	variantEffect(de.charite.compbio.jannovar.annotation.VariantEffect variantEffect)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Builder

public Builder()

Method Detail

variantEffect

public TranscriptAnnotation.Builder variantEffect(de.charite.compbio.jannovar.annotation.VariantEffect variantEffect)

geneSymbol

public TranscriptAnnotation.Builder geneSymbol(java.lang.String geneSymbol)

accession

public TranscriptAnnotation.Builder accession(java.lang.String accession)

hgvsGenomic

public TranscriptAnnotation.Builder hgvsGenomic(java.lang.String hgvsGenomic)

hgvsCdna

public TranscriptAnnotation.Builder hgvsCdna(java.lang.String hgvsCdna)

hgvsProtein

public TranscriptAnnotation.Builder hgvsProtein(java.lang.String hgvsProtein)

distanceFromNearestGene

public TranscriptAnnotation.Builder distanceFromNearestGene(int distanceFromNearestGene)

build

public TranscriptAnnotation build()