Hierarchy For All Packages

Package Hierarchies:

• org.mulinlab.varnote.cmdline,
• org.mulinlab.varnote.cmdline.abstractclass,
• org.mulinlab.varnote.cmdline.collection,
• org.mulinlab.varnote.cmdline.constant,
• org.mulinlab.varnote.cmdline.index,
• org.mulinlab.varnote.cmdline.programgroups,
• org.mulinlab.varnote.cmdline.tools,
• org.mulinlab.varnote.cmdline.tools.config,
• org.mulinlab.varnote.cmdline.txtreader.abs,
• org.mulinlab.varnote.cmdline.txtreader.anno,
• org.mulinlab.varnote.cmdline.txtreader.run,
• org.mulinlab.varnote.config.anno,
• org.mulinlab.varnote.config.anno.databse,
• org.mulinlab.varnote.config.anno.databse.anno,
• org.mulinlab.varnote.config.anno.databse.filter,
• org.mulinlab.varnote.config.anno.query,
• org.mulinlab.varnote.config.index,
• org.mulinlab.varnote.config.io,
• org.mulinlab.varnote.config.io.temp,
• org.mulinlab.varnote.config.param,
• org.mulinlab.varnote.config.param.output,
• org.mulinlab.varnote.config.param.postDB,
• org.mulinlab.varnote.config.param.query,
• org.mulinlab.varnote.config.parser,
• org.mulinlab.varnote.config.parser.output,
• org.mulinlab.varnote.config.run,
• org.mulinlab.varnote.constants,
• org.mulinlab.varnote.exceptions,
• org.mulinlab.varnote.filters,
• org.mulinlab.varnote.filters.iterator,
• org.mulinlab.varnote.filters.mendelian,
• org.mulinlab.varnote.filters.query,
• org.mulinlab.varnote.filters.query.gt,
• org.mulinlab.varnote.filters.query.line,
• org.mulinlab.varnote.filters.query.vc,
• org.mulinlab.varnote.operations.decode,
• org.mulinlab.varnote.operations.index,
• org.mulinlab.varnote.operations.mapper,
• org.mulinlab.varnote.operations.process,
• org.mulinlab.varnote.operations.query,
• org.mulinlab.varnote.operations.readers.db,
• org.mulinlab.varnote.operations.readers.itf,
• org.mulinlab.varnote.operations.readers.itf.thread,
• org.mulinlab.varnote.operations.readers.query,
• org.mulinlab.varnote.operations.stack,
• org.mulinlab.varnote.utils,
• org.mulinlab.varnote.utils.block,
• org.mulinlab.varnote.utils.database,
• org.mulinlab.varnote.utils.database.index,
• org.mulinlab.varnote.utils.database.index.vannoIndex,
• org.mulinlab.varnote.utils.enumset,
• org.mulinlab.varnote.utils.format,
• org.mulinlab.varnote.utils.gz,
• org.mulinlab.varnote.utils.headerparser,
• org.mulinlab.varnote.utils.jannovar,
• org.mulinlab.varnote.utils.mapreduce,
• org.mulinlab.varnote.utils.node,
• org.mulinlab.varnote.utils.pedigree,
• org.mulinlab.varnote.utils.stream

Class Hierarchy

• java.lang.Object
  • org.mulinlab.varnote.filters.query.gt.ABGenotypeFilter (implements org.mulinlab.varnote.filters.query.gt.GenotypeFilter)
    • org.mulinlab.varnote.filters.query.gt.DepthFilter
    • org.mulinlab.varnote.filters.query.gt.GenotypeQualityFilter
  • org.mulinlab.varnote.config.anno.databse.anno.AbstractDatababseAnnoParser
    • org.mulinlab.varnote.config.anno.databse.anno.DatabaseAnnoBEDParser
    • org.mulinlab.varnote.config.anno.databse.anno.DatabaseAnnoVCFParser
  • org.mulinlab.varnote.config.anno.databse.filter.AbstractDatabaseFilter (implements org.mulinlab.varnote.config.anno.databse.filter.DatababseFilter)
    • org.mulinlab.varnote.config.anno.databse.filter.DatabaseBEDFilter
    • org.mulinlab.varnote.config.anno.databse.filter.DatabaseVCFFilter
  • org.mulinlab.varnote.operations.readers.db.AbstractDBReader
    • org.mulinlab.varnote.operations.readers.db.TbiReader
      • org.mulinlab.varnote.operations.readers.db.TbiMixReader
      • org.mulinlab.varnote.operations.readers.db.TbiSweepReader
    • org.mulinlab.varnote.operations.readers.db.VannoReader
      • org.mulinlab.varnote.operations.readers.db.VannoMixReader
      • org.mulinlab.varnote.operations.readers.db.VannoSweepReader
  • htsjdk.tribble.AbstractFeatureCodec<FEATURE_TYPE,SOURCE> (implements htsjdk.tribble.FeatureCodec<FEATURE_TYPE,SOURCE>)
    • htsjdk.tribble.AsciiFeatureCodec<T>
      • org.mulinlab.varnote.operations.decode.LocCodec
        • org.mulinlab.varnote.operations.decode.BEDLocCodec
        • org.mulinlab.varnote.operations.decode.RSIDLocCodec
        • org.mulinlab.varnote.operations.decode.TABLocCodec
        • org.mulinlab.varnote.operations.decode.VCFLocCodec
  • org.mulinlab.varnote.operations.readers.query.AbstractFileReader
    • org.mulinlab.varnote.operations.readers.query.BEDFileReader
    • org.mulinlab.varnote.operations.readers.query.TABFileReader
    • org.mulinlab.varnote.operations.readers.query.VCFFileReader
  • org.mulinlab.varnote.operations.mapper.AbstractMapper<T> (implements org.mulinlab.varnote.utils.mapreduce.Mapper<T>)
    • org.mulinlab.varnote.operations.mapper.AnnoMapper
    • org.mulinlab.varnote.operations.mapper.CounterMapper
    • org.mulinlab.varnote.operations.mapper.IntersetMapper
  • org.mulinlab.varnote.operations.query.AbstractQuery (implements org.mulinlab.varnote.operations.query.Query)
    • org.mulinlab.varnote.operations.query.SweepQuery
    • org.mulinlab.varnote.operations.query.TabixQuery
    • org.mulinlab.varnote.operations.query.VannoQuery
  • org.mulinlab.varnote.config.anno.query.AbstractQueryParser
    • org.mulinlab.varnote.config.anno.query.QueryBEDParser
    • org.mulinlab.varnote.config.anno.query.QueryVCFParser
  • org.mulinlab.varnote.cmdline.txtreader.abs.AbstractQueryReader<T> (implements org.mulinlab.varnote.cmdline.txtreader.abs.RunReaderInterface<T>)
    • org.mulinlab.varnote.cmdline.txtreader.anno.AnnoConfigReader<T>
    • org.mulinlab.varnote.cmdline.txtreader.anno.FormatReader<T>
    • org.mulinlab.varnote.cmdline.txtreader.abs.QueryReader<T>
      • org.mulinlab.varnote.cmdline.txtreader.run.FileQueryReader<T>
        • org.mulinlab.varnote.cmdline.txtreader.run.AnnoRunReader<T>
        • org.mulinlab.varnote.cmdline.txtreader.run.IntersectRunReader<T>
      • org.mulinlab.varnote.cmdline.txtreader.anno.OverlapHeaderReader<T>
    • org.mulinlab.varnote.cmdline.txtreader.anno.VcfInfoReader<T>
  • org.mulinlab.varnote.operations.stack.AbstractReaderStack
    • org.mulinlab.varnote.operations.stack.ExactStack
    • org.mulinlab.varnote.operations.stack.IntervalStack
      • org.mulinlab.varnote.operations.stack.IntervalStackFC
  • org.mulinlab.varnote.filters.query.vc.ABVariantFilter (implements org.mulinlab.varnote.filters.query.VariantFilter<T>)
    • org.mulinlab.varnote.filters.query.vc.QDFilter
  • org.mulinlab.varnote.config.parser.output.ADOutFeature
    • org.mulinlab.varnote.config.parser.output.AnnoOut
  • org.mulinlab.varnote.utils.jannovar.AllelePosition
  • org.mulinlab.varnote.cmdline.collection.AnnoConfigArgumentCollection
  • org.mulinlab.varnote.config.parser.AnnoParser (implements org.mulinlab.varnote.config.parser.ResultParser)
  • org.mulinlab.varnote.cmdline.programgroups.AnnoProgramGroup (implements org.broadinstitute.barclay.argparser.CommandLineProgramGroup)
  • org.mulinlab.varnote.cmdline.constant.Arguments
  • org.mulinlab.varnote.utils.gz.BGZReader
  • org.mulinlab.varnote.operations.readers.itf.BGZReader (implements org.mulinlab.varnote.operations.readers.itf.QueryReaderItf)
  • org.mulinlab.varnote.utils.gz.BlockCompressedFilePointerUtil
  • org.mulinlab.varnote.utils.block.BlockFeature
  • org.mulinlab.varnote.utils.block.BlockFeature.VannoFeature
  • org.mulinlab.varnote.utils.stream.ByteInputStream
  • org.mulinlab.varnote.utils.stream.BZip2Constants
  • org.mulinlab.varnote.utils.stream.BZIP2InputStream
  • org.mulinlab.varnote.utils.stream.BZIP2InputStream.Spider
  • org.mulinlab.varnote.utils.jannovar.ChromosomalRegionIndex<T>
  • org.mulinlab.varnote.cmdline.abstractclass.CMDProgram
    • org.mulinlab.varnote.cmdline.abstractclass.ConfigProgram
      • org.mulinlab.varnote.cmdline.tools.config.AnnotationConfig
      • org.mulinlab.varnote.cmdline.tools.config.IntersectConfig
    • org.mulinlab.varnote.cmdline.tools.RandomAccess
    • org.mulinlab.varnote.cmdline.abstractclass.RunProgram
      • org.mulinlab.varnote.cmdline.tools.AnnotationIntersectFile
      • org.mulinlab.varnote.cmdline.index.IndexInfo
      • org.mulinlab.varnote.cmdline.abstractclass.IndexProgram
        • org.mulinlab.varnote.cmdline.index.Index
      • org.mulinlab.varnote.cmdline.abstractclass.QueryProgram
        • org.mulinlab.varnote.cmdline.tools.Count
        • org.mulinlab.varnote.cmdline.abstractclass.QueryFileProgram
          • org.mulinlab.varnote.cmdline.tools.Annotation
          • org.mulinlab.varnote.cmdline.tools.Intersect
  • org.mulinlab.varnote.cmdline.constant.CommandLineDefaults
  • org.mulinlab.varnote.cmdline.programgroups.ConfigProgramGroup (implements org.broadinstitute.barclay.argparser.CommandLineProgramGroup)
  • org.mulinlab.varnote.operations.process.CountResultProcess (implements org.mulinlab.varnote.operations.process.ProcessResult)
  • org.mulinlab.varnote.utils.stream.CRC
  • org.mulinlab.varnote.utils.database.Database
    • org.mulinlab.varnote.utils.database.TbiDatabase
    • org.mulinlab.varnote.utils.database.VannoDatabase
  • org.mulinlab.varnote.utils.database.DatabaseFactory
  • org.mulinlab.varnote.cmdline.collection.DBArgumentCollection
  • org.mulinlab.varnote.utils.ExpressionUtils
  • org.mulinlab.varnote.config.anno.databse.anno.ExtractConfig
  • org.mulinlab.varnote.config.anno.FieldFormat
  • org.mulinlab.varnote.config.anno.FieldFormat.FormatVariable
  • org.mulinlab.varnote.config.anno.databse.filter.FilterConfig
  • org.mulinlab.varnote.config.param.FilterParam
  • org.mulinlab.varnote.utils.jannovar.Gene
  • org.mulinlab.varnote.utils.jannovar.GeneBuilder
  • org.mulinlab.varnote.utils.GenomicRegionUtils
  • org.mulinlab.varnote.constants.GlobalParameter
  • org.mulinlab.varnote.utils.stream.GZInputStream
  • org.mulinlab.varnote.utils.stream.GZInputStream.GZReader
  • org.mulinlab.varnote.operations.readers.itf.GZIPReader (implements org.mulinlab.varnote.operations.readers.itf.QueryReaderItf)
  • org.mulinlab.varnote.operations.readers.itf.thread.GZIPThreadReader (implements org.mulinlab.varnote.operations.readers.itf.QueryReaderItf)
  • org.mulinlab.varnote.utils.headerparser.HeaderFormatReader
  • org.mulinlab.varnote.filters.query.line.HeaderLineFilter (implements org.mulinlab.varnote.filters.query.line.LineFilter)
    • org.mulinlab.varnote.filters.query.line.BEDHeaderLineFilter
    • org.mulinlab.varnote.filters.query.line.TABHeaderLineFilter
    • org.mulinlab.varnote.filters.query.line.VCFHeaderLineFilter
  • org.mulinlab.varnote.utils.database.index.Index
    • org.mulinlab.varnote.utils.database.index.TbiIndex
    • org.mulinlab.varnote.utils.database.index.vannoIndex.VannoIndex
      • org.mulinlab.varnote.utils.database.index.vannoIndex.VannoIndexV1
  • org.mulinlab.varnote.cmdline.collection.IndexArgumentCollection
  • org.mulinlab.varnote.utils.database.index.IndexFactory
  • org.mulinlab.varnote.cmdline.programgroups.IndexProgramGroup (implements org.broadinstitute.barclay.argparser.CommandLineProgramGroup)
  • org.mulinlab.varnote.config.index.IndexWriteConfig
  • org.mulinlab.varnote.operations.index.IndexWriter
  • org.mulinlab.varnote.operations.index.IndexWriter.BlockBean
  • org.mulinlab.varnote.operations.index.IndexWriter.SROBListBean
  • org.mulinlab.varnote.cmdline.collection.InputFileArgumentCollection
  • java.io.InputStream (implements java.io.Closeable)
    • org.mulinlab.varnote.utils.stream.CompressorInputStream
      • org.mulinlab.varnote.utils.stream.AdvancedBZip2CompressorInputStream
    • java.io.FilterInputStream
      • org.mulinlab.varnote.utils.stream.LimitInputStream
  • org.mulinlab.varnote.utils.IOutils
  • org.mulinlab.varnote.utils.jannovar.JannovarAnnotationService
  • org.mulinlab.varnote.utils.JannovarUtils
  • org.mulinlab.varnote.utils.jannovar.JannovarVariantAnnotator (implements org.mulinlab.varnote.utils.jannovar.VariantAnnotator)
  • org.mulinlab.varnote.filters.iterator.LineFilterIterator (implements java.util.Iterator<E>)
    • org.mulinlab.varnote.filters.iterator.LocFilterIterator
    • org.mulinlab.varnote.filters.iterator.VCFFilterIterator
  • org.mulinlab.varnote.utils.stream.LocalFile
  • org.mulinlab.varnote.utils.node.LocFeature (implements htsjdk.tribble.Feature)
    • org.mulinlab.varnote.utils.node.NodeWithFilePointer
  • org.mulinlab.varnote.utils.LoggingUtils
  • org.mulinlab.varnote.operations.readers.itf.LongLineReader (implements org.mulinlab.varnote.operations.readers.itf.QueryReaderItf)
  • org.mulinlab.varnote.filters.mendelian.MendelianInheritanceFilter
    • org.mulinlab.varnote.filters.mendelian.MendelianInheritanceADFilter
    • org.mulinlab.varnote.filters.mendelian.MendelianInheritanceARFilter
    • org.mulinlab.varnote.filters.mendelian.MendelianInheritanceXDFilter
    • org.mulinlab.varnote.filters.mendelian.MendelianInheritanceXRFilter
  • org.mulinlab.varnote.utils.headerparser.MetaReader
  • org.mulinlab.varnote.filters.iterator.NoFilterIterator (implements htsjdk.tribble.readers.LineIterator)
  • org.mulinlab.varnote.config.anno.NormalField
    • org.mulinlab.varnote.config.anno.InfoField
  • org.mulinlab.varnote.cmdline.collection.OutputArgumentCollection
    • org.mulinlab.varnote.cmdline.collection.AnnoOutputArgumentCollection
  • java.io.OutputStream (implements java.io.Closeable, java.io.Flushable)
    • java.io.FilterOutputStream
      • org.mulinlab.varnote.utils.gz.MyEndianOutputStream
    • org.mulinlab.varnote.utils.gz.MyBlockCompressedOutputStream (implements htsjdk.samtools.util.LocationAware)
  • org.mulinlab.varnote.config.param.Param
    • org.mulinlab.varnote.config.param.DBParam
    • org.mulinlab.varnote.config.param.IndexParam
    • org.mulinlab.varnote.config.param.output.OutParam
      • org.mulinlab.varnote.config.param.output.AnnoOutParam
      • org.mulinlab.varnote.config.param.output.IntersetOutParam
    • org.mulinlab.varnote.config.param.RunParam
  • org.mulinlab.varnote.utils.pedigree.PedFiles
  • org.mulinlab.varnote.utils.pedigree.Pedigree
  • org.mulinlab.varnote.utils.pedigree.Pedigree.Individual
  • org.mulinlab.varnote.utils.pedigree.Pedigree.Individual.Builder
  • org.mulinlab.varnote.utils.pedigree.PedigreeConverter
  • org.mulinlab.varnote.config.param.postDB.PostDBParam
    • org.mulinlab.varnote.config.param.postDB.DBAnnoParam
    • org.mulinlab.varnote.config.param.postDB.DBFilterParam
  • org.mulinlab.varnote.config.io.PrintGZ
  • org.mulinlab.varnote.config.io.temp.Printter
    • org.mulinlab.varnote.config.io.temp.FlatPrintter
    • org.mulinlab.varnote.config.io.temp.ZipPrintter
  • org.mulinlab.varnote.config.param.query.QueryParam
    • org.mulinlab.varnote.config.param.query.QueryFileParam
    • org.mulinlab.varnote.config.param.query.QueryRegionParam
  • org.mulinlab.varnote.cmdline.programgroups.QueryProgramGroup (implements org.broadinstitute.barclay.argparser.CommandLineProgramGroup)
  • org.mulinlab.varnote.utils.stream.Rand
  • org.mulinlab.varnote.utils.ReducerFactory
  • org.mulinlab.varnote.filters.RegionFilter (implements org.mulinlab.varnote.filters.query.VariantFilter<T>)
  • org.mulinlab.varnote.utils.jannovar.RegulatoryFeature (implements org.mulinlab.varnote.utils.jannovar.ChromosomalRegion)
  • org.mulinlab.varnote.cmdline.collection.RunArgumentCollection
  • org.mulinlab.varnote.config.run.RunConfig
    • org.mulinlab.varnote.config.run.CountRunConfig
    • org.mulinlab.varnote.config.run.OverlapRunConfig
      • org.mulinlab.varnote.config.run.AnnoRunConfig
    • org.mulinlab.varnote.config.run.QueryRegionConfig
  • org.mulinlab.varnote.utils.RunFactory
  • org.mulinlab.varnote.utils.mapreduce.SimpleMapReduce<T,M> (implements org.mulinlab.varnote.utils.mapreduce.MapReduce<T,M>)
  • org.mulinlab.varnote.filters.query.line.SkipLineFilter (implements org.mulinlab.varnote.filters.query.line.LineFilter)
  • org.mulinlab.varnote.operations.readers.itf.thread.SpiderReader (implements org.mulinlab.varnote.operations.readers.itf.QueryReaderItf)
  • org.mulinlab.varnote.utils.block.SROB
  • org.mulinlab.varnote.utils.block.SROB.Feature
  • htsjdk.tribble.index.tabix.TabixFormat (implements java.lang.Cloneable)
    • org.mulinlab.varnote.utils.format.Format
  • org.mulinlab.varnote.operations.process.TabixResultProcess (implements org.mulinlab.varnote.operations.process.ProcessResult)
  • org.mulinlab.varnote.cmdline.collection.TagArgument (implements org.broadinstitute.barclay.argparser.TaggedArgument)
  • org.mulinlab.varnote.operations.readers.db.TbiReader.TbiIteratorImpl (implements org.mulinlab.varnote.operations.readers.db.AbstractDBReader.Iterator)
    • org.mulinlab.varnote.operations.readers.db.TbiMixReader.MixIteratorImpl
    • org.mulinlab.varnote.operations.readers.db.TbiSweepReader.SweepIteratorImpl
  • org.mulinlab.varnote.config.io.temp.ThreadPrintter
    • org.mulinlab.varnote.config.io.temp.FlatThreadPrintter
    • org.mulinlab.varnote.config.io.temp.ZipThreadPrintter
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • org.mulinlab.varnote.utils.enumset.GenomeAssembly.InvalidGenomeAssemblyException
        • org.mulinlab.varnote.exceptions.InvalidArgumentException
  • org.mulinlab.varnote.utils.TimeMetric
  • org.mulinlab.varnote.utils.jannovar.TranscriptAnnotation
  • org.mulinlab.varnote.utils.jannovar.TranscriptAnnotation.Builder
  • org.mulinlab.varnote.config.anno.ValWithAllele
  • org.mulinlab.varnote.operations.readers.db.VannoReader.SROBListRead
  • org.mulinlab.varnote.operations.readers.db.VannoReader.VannoIteratorImpl (implements org.mulinlab.varnote.operations.readers.db.AbstractDBReader.Iterator)
    • org.mulinlab.varnote.operations.readers.db.VannoMixReader.MixVannoIteratorImpl
    • org.mulinlab.varnote.operations.readers.db.VannoSweepReader.SweepIteratorImpl
  • org.mulinlab.varnote.operations.process.VannoResultProcess (implements org.mulinlab.varnote.operations.process.ProcessResult)
  • org.mulinlab.varnote.utils.VannoUtils
  • org.mulinlab.varnote.utils.jannovar.VariantAnnotation (implements org.mulinlab.varnote.utils.jannovar.Variant)
  • org.mulinlab.varnote.utils.jannovar.VariantAnnotation.Builder
  • org.mulinlab.varnote.cmdline.collection.VariantEffectArgumentCollection
  • org.mulinlab.varnote.utils.jannovar.VariantEffectUtility
  • org.mulinlab.varnote.cmdline.VarNoteCommandLine
  • org.mulinlab.varnote.config.anno.databse.VCFParser

Interface Hierarchy

• org.mulinlab.varnote.operations.readers.db.AbstractDBReader.Iterator
• java.lang.Comparable<T>
  • org.mulinlab.varnote.utils.jannovar.ChromosomalRegion
• org.mulinlab.varnote.config.anno.databse.filter.DatababseFilter
• org.mulinlab.varnote.filters.query.gt.GenotypeFilter
• org.mulinlab.varnote.filters.query.line.LineFilter
• org.mulinlab.varnote.utils.mapreduce.Mapper<T>
• org.mulinlab.varnote.utils.mapreduce.MapReduce<T,M>
• org.mulinlab.varnote.operations.process.ProcessBlock
• org.mulinlab.varnote.operations.process.ProcessResult
• org.mulinlab.varnote.operations.query.Query
• org.mulinlab.varnote.operations.readers.itf.QueryReaderItf
• org.mulinlab.varnote.utils.mapreduce.Reducer<T,V,M>
• org.mulinlab.varnote.config.parser.ResultParser
• org.mulinlab.varnote.cmdline.txtreader.abs.RunReaderInterface<T>
• org.mulinlab.varnote.utils.jannovar.VariantAnnotator
• org.mulinlab.varnote.utils.jannovar.VariantCoordinates
  • org.mulinlab.varnote.utils.jannovar.Variant
• org.mulinlab.varnote.filters.query.VariantFilter<T>

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.mulinlab.varnote.utils.VannoUtils.FileExt
    • org.mulinlab.varnote.utils.enumset.Snp2PosMode
    • org.mulinlab.varnote.utils.enumset.GenomicRegionType
    • org.mulinlab.varnote.utils.enumset.VairantQC
    • org.mulinlab.varnote.utils.enumset.CellType
    • org.mulinlab.varnote.utils.enumset.Mode
    • org.mulinlab.varnote.utils.enumset.RegFunc
    • org.mulinlab.varnote.utils.enumset.GenomeAssembly
    • org.mulinlab.varnote.utils.enumset.TranscriptSource
    • org.mulinlab.varnote.utils.enumset.CellMark
    • org.mulinlab.varnote.utils.enumset.FileType
    • org.mulinlab.varnote.utils.enumset.VariantType
    • org.mulinlab.varnote.utils.enumset.IndexType
    • org.mulinlab.varnote.utils.enumset.ChromosomeType
    • org.mulinlab.varnote.utils.enumset.AFSource
    • org.mulinlab.varnote.utils.enumset.GenotypeQC
    • org.mulinlab.varnote.utils.enumset.AnnoOutFormat
    • org.mulinlab.varnote.utils.enumset.ModeOfInheritance
    • org.mulinlab.varnote.utils.enumset.QuickFileType
    • org.mulinlab.varnote.utils.enumset.OutMode
    • org.mulinlab.varnote.utils.enumset.FormatType
    • org.mulinlab.varnote.utils.enumset.IntersectType
    • org.mulinlab.varnote.utils.enumset.Delimiter
    • org.mulinlab.varnote.utils.enumset.PredictionFunc
    • org.mulinlab.varnote.utils.enumset.Population
    • org.mulinlab.varnote.utils.enumset.Priority
    • org.mulinlab.varnote.utils.pedigree.Pedigree.Individual.Sex
    • org.mulinlab.varnote.utils.pedigree.Pedigree.Individual.Status
    • org.mulinlab.varnote.utils.jannovar.RegulatoryFeature.FeatureType